Rnaseq
Mostrando 1-12 de 29 artigos, teses e dissertações.
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1. Contributions of RNA-seq to improve in vitro embryo production (IVP)
Abstract In Vitro Embryo Production (IVP) is widely used to improve the reproductive efficiency of livestock animals, however increasing the embryo development rates and pregnancy outcomes is still a challenge for some species. Thus, the lack of biological knowledge hinders developing specie-specific IVP protocols. Therefore, the contributions of RNA-seq to
Anim. Reprod.. Publicado em: 25/11/2019
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2. Genome-wide identification and characterization of R2R3-MYB genes in Medicago truncatula
Abstract MYB is a large family of plant transcription factors. Its function has been identified in several plants, while there are few reports in Medicago truncatula. In this study, we used RNA-seq data to analyze and identify R2R3-MYB genes in the genome of Medicago truncatula. Phylogenetic analysis classified 150 MtMYB genes into 21 subfamilies with homolo
Genet. Mol. Biol.. Publicado em: 14/11/2019
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3. Araucaria angustifolia chloroplast genome sequence and its relation to other Araucariaceae
Abstract Araucaria angustifolia is endemic to southern Brazil. Known as Brazilian pine, A. angustifolia is the only native conifer species with economic and social relevance in this country. Due to massive exploitation, it has suffered a significant population decline and currently is classified as critically endangered. This encouraged the scientific commun
Genet. Mol. Biol.. Publicado em: 14/11/2019
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4. Does the Glyphosate Treatment Interfere Negatively on RNA Integrity in Glyphosate-Resistant and -Sensitive Conyza bonariensis?
RESUMO: A buva (Conyza bonariensis (L.) Cronq.) está entre as plantas daninhas resistentes ao glifosato mais difíceis de serem manejadas em todo o mundo. Na ciência das plantas daninhas, abordagens moleculares, como o sequenciamento de RNA (RNA-Seq) e a reação da transcriptase reversa da polimerase em tempo real (RT-qPCR), têm sido empregadas para estu
Planta daninha. Publicado em: 04/11/2019
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5. [PROVISIONAL] Genome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean
Abstract Genes related to the response to drought stress in leaf and root tissue of drought-susceptible (DS) and tolerant (DT) genotypes were characterized by RNA-Seq. In total, 54,750 transcripts, representative of 28,590 genes, were identified; of these, 1,648 were of high-fidelity (merge of 12 libraries) and described for the first time in the Andean germ
Genet. Mol. Biol.. Publicado em: 12/08/2019
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6. Gene expression during the germination of coffee seed
Resumo: A germinação da semente do café (Coffea arabica L.) é resultado de eventos que ocorrem simultaneamente no embrião e endosperma. Para entender os mecanismos moleculares responsáveis por estes eventos, nós realizamos uma análise transcricional do embrião e dos endospermas micropilar e lateral de sementes embebidas por 10 dias. O sequenciamento
J. Seed Sci.. Publicado em: 01/07/2019
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7. Evaluation of SSR and SNP markers in Rubus glaucus Benth progenitors selection
Resumo Amora de castilla (Rubus glaucus Benth) é um dos produtos com maior potencial de desenvolvimento agrícola Colômbiano, que combina características dos subgéneros Idaeobatus e Rubus. Apesar da sua reconhecida importância na geração de rendas para os pequenos produtores, este cultivo tem recebido pouco desenvolvimento tecnológico. Como resultad
Rev. Bras. Frutic.. Publicado em: 31/01/2019
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8. Deep sequencing analysis of toad Rhinella schneideri skin glands and partial biochemical characterization of its cutaneous secretion
Abstract Background: Animal poisons and venoms are sources of biomolecules naturally selected. Rhinella schneideri toads are widespread in the whole Brazilian territory and they have poison glands and mucous gland. Recently, protein from toads’ secretion has gaining attention. Frog skin is widely known to present great number of host defense peptides and
J. Venom. Anim. Toxins incl. Trop. Dis. Publicado em: 17/12/2018
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9. Genome-wide Analysis of LBD (LATERAL ORGAN BOUNDARIES Domain) Gene Family in Brassica rapa
ABSTRACT LOB (lateral organ boundaries)-domain proteins define a family of plant-specific transcription factors involved in developmental process from embryogenesis to seed production. They play a crucial role in shaping the plant architecture through coordinating cell fate at meristem to organ boundaries. Identification of LBD genes from Brassica rapa gen
Braz. arch. biol. technol.. Publicado em: 29/11/2018
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10. Análise transcriptômica da expressão gênica diferencial revela um aumento nos níveis de COX2 durante a infecção in vitro por herpesvirus canino
RESUMO: O herpesvírus canino (CaHV-1) afeta os canídeos em todo o mundo, causando morte em neonatos e hospedeiros imunossuprimidos. A infecção aguda por CaHV-1 pode causar problemas reprodutivos, respiratórios e neurológicos em animais adultos. A patogênese viral e expressão de genes hospedeiros durante a infecção por CaHV-1 ainda não são bem com
Cienc. Rural. Publicado em: 25/10/2018
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11. Identification of potential target genes of USP22 via ChIP-seq and RNA-seq analysis in HeLa cells
Abstract The ubiquitin-specific protease 22 (USP22) is an oncogene and its expression is upregulated in many types of cancer. In the nucleus, USP22 functions as one subunit of the SAGA to regulate gene transcription. However, the genome-wide USP22 binding sites and its direct target genes are yet clear. In this study, we characterized the potential genomic b
Genet. Mol. Biol.. Publicado em: 11/06/2018
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12. Biosynthetic Insights into p-Hydroxybenzoic Acid-Derived Benzopyrans in Piper gaudichaudianum
Piper gaudichaudianum Kunth (Piperaceae) accumulates gaudichaudianic acid, a prenylated benzopyran, as its major component. Interestingly, this trypanocidal compound occurs as a racemic mixture. Herein, transcriptomic investigations of Piper gaudichaudianum using the RNA-seq approach are reported, and from the analysis of the transcripts expressed it was pos
J. Braz. Chem. Soc.. Publicado em: 2018-05