Genome Re Annotation
Mostrando 1-12 de 12 artigos, teses e dissertações.
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1. A re-annotation of the Anopheles darlingi mobilome
Abstract The mobilome, portion of the genome composed of transposable elements (TEs), of Anopheles darlingi was described together with the genome of this species. Here, this mobilome was revised using similarity and de novo search approaches. A total of 5.6% of the A. darlingi genome is derived of TEs. Class I gypsy and copia were the most abundant superfam
Genet. Mol. Biol.. Publicado em: 21/01/2019
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2. Um sistema baseado em agentes para re-anotação de genomas / An agent-based system for re-annotation of genomes
A análise da informação contida em seqüências genéticas tem ganho cada vez mais importância nos dias atuais. A chamada anotação genética tem o objetivo de, a partir de uma ou mais seqüências, determinar suas características estruturais e funcionais. Muitos processos de anotação já foram realizados com êxito aumentando consideravelmente nosso
Publicado em: 2007
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3. The past, present and future of genome-wide re-annotation
Annotation, the process by which structural or functional information is inferred for genes or proteins, is crucial for obtaining value from genome sequences. We define the process of annotating a previously annotated genome sequence as 're-annotation', and examine the strengths and weaknesses of current manual and automatic genome-wide re-annotation approac
BioMed Central.
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4. Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames
Four years after the original sequence submission, we have re-annotated the genome of Mycoplasma pneumoniae to incorporate novel data. The total number of ORFss has been increased from 677 to 688 (10 new proteins were predicted in intergenic regions, two further were newly identified by mass spectrometry and one protein ORF was dismissed) and the number of R
Oxford University Press.
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5. RiceGAAS: an automated annotation system and database for rice genome sequence
An extensive effort of the International Rice Genome Sequencing Project (IRGSP) has resulted in rapid accumulation of genome sequence, and >137 Mb has already been made available to the public domain as of August 2001. This requires a high-throughput annotation scheme to extract biologically useful and timely information from the sequence data on a regular b
Oxford University Press.
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6. Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes
BioMed Central.
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7. Whole Genome Sequence Comparisons and “Full-Length” cDNA Sequences: A Combined Approach to Evaluate and Improve Arabidopsis Genome Annotation
To evaluate the existing annotation of the Arabidopsis genome further, we generated a collection of evolutionary conserved regions (ecores) between Arabidopsis and rice. The ecore analysis provides evidence that the gene catalog of Arabidopsis is not yet complete, and that a number of these annotations require re-examination. To improve the Arabidopsis genom
Cold Spring Harbor Laboratory Press.
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8. ProbeLynx: a tool for updating the association of microarray probes to genes
As genome sequence data and gene prediction improve, probes developed for a given microarray experiment should be continuously re-evaluated for their specificity for given genes. ProbeLynx(www.pathogenomics.ca/probelynx) is a new web service which uses current genomic sequence information to re-examine microarray probe specificity and provide annotation upda
Oxford University Press.
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9. GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
Genomic projects heavily depend on genome annotations and are limited by the current deficiencies in the published predictions of gene structure and function. It follows that, improved annotation will allow better data mining of genomes, and more secure planning and design of experiments. The purpose of the GeneFarm project is to obtain homogeneous, reliable
Oxford University Press.
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10. EcoGene: a genome sequence database for Escherichia coli K-12
The EcoGene database provides a set of gene and protein sequences derived from the genome sequence of Escherichia coli K-12. EcoGene is a source of re-annotated sequences for the SWISS-PROT and Colibri databases. EcoGene is used for genetic and physical map compilations in collaboration with the Coli Genetic Stock Center. The EcoGene12 release includes 4293
Oxford University Press.
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11. Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22
In this report, we have achieved a richer view of the transcriptome for Chromosomes 21 and 22 by using high-density oligonucleotide arrays on cytosolic poly(A)+ RNA. Conservatively, only 31.4% of the observed transcribed nucleotides correspond to well-annotated genes, whereas an additional 4.8% and 14.7% correspond to mRNAs and ESTs, respectively. Approximat
Cold Spring Harbor Laboratory Press.
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12. PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information
As the number of protein folds is quite limited, a mode of analysis that will be increasingly common in the future, especially with the advent of structural genomics, is to survey and re-survey the finite parts list of folds from an expanding number of perspectives. We have developed a new resource, called PartsList, that lets one dynamically perform th
Oxford University Press.