Bioinformatics Comparative Genomics
Mostrando 1-12 de 17 artigos, teses e dissertações.
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1. Identificação e Análise de Sequências Codificantes com Atributos Conflitantes em Genomas Procariotos / Analysis and Identification of Prokaryotic Coding Sequences With Conflicting Atributes
The advent of new sequencing technologies and the development of computational tools that facilitate the analysis of genomes, generated the exponential growth of genome databases. New approaches in-silico of the comparative genomics use such data in its comparisons. Nevertheless, recent work on the genome of Escherichia coli indicate that the current state o
Publicado em: 2010
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2. GINGA - Graphical Interface for Comparative Genome Analysis: o desenvolvimento de um sistema computacional de visualização gráfica para a análise comparativa de genomas de bactérias / GINGA - Graphical Interface for comparative Genome Analysis: development of a computational system to visualize the comparative of bacterial genomes in a graphical view
This study aimed to develop a computational system applied to the comparative analysis of prokaryotic genomes in a graphical view. The system named GINGA Graphical Interface for comparative Genome Analysis was developed to analyse a draft genome sequence in comparison to a complete genome. The system shows the alignment between sequence of reads, contigs and
Publicado em: 2007
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3. Implementation of a plant-associated bacteria proteome database:ProBacter / Implementação de um banco de dados de proteomas de bactérias associadas a plantas: ProBacter
This dissertation offers a computation approach to comparative analysis between cmpletely sequenced genomes of plant-associated bacteria. The created system was denominated ProBacter and it is composed of a relational database and computational tools for sequence analysis. The database was created from a diverse data source, including information from GenBan
Publicado em: 2007
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4. RegiÃes gÃnicas de interesse para o desenvolvimento de um diagnÃstico do Papillomavirus Humano: abordagem in silico
Cervical cancer is the second most common cancer in women and the seventh in the world with 493,000 of new cases per year, and mortality between 50 and 55%. In Brazil, the estimate is 19,260 new cases for 2006, with an estimated risk for 20.31 cases to each 100,000 women. In Brazil, as well as in the others developing countries, the frequency of the Pap smea
Publicado em: 2006
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5. Geração e análise comparativa de seqüências genômicas de Trypanosoma rangeli / The generation and comparative analisys of genomic sequences of the Trypanosoma rangeli
The hemoflagellate protozoan parasite Trypanosoma (Herpetosoma) rangeli Tejera, 1920 (Kinetoplastida: Tryponosomatidae) share several species of invertebrate and vertebrate hosts with T. cruzi, etiological agent of Chagas disease. Recently, the genome of 3 trypanosomatid species of major importance on human health (Tri-Tryps) were described but non-pathogeni
Publicado em: 2006
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6. The SOL Genomics Network. A Comparative Resource for Solanaceae Biology and Beyond1
The SOL Genomics Network (SGN; http://sgn.cornell.edu) is a rapidly evolving comparative resource for the plants of the Solanaceae family, which includes important crop and model plants such as potato (Solanum tuberosum), eggplant (Solanum melongena), pepper (Capsicum annuum), and tomato (Solanum lycopersicum). The aim of SGN is to relate these species to on
American Society of Plant Biologists.
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7. UK CropNet: a collection of databases and bioinformatics resources for crop plant genomics
The UK Crop Plant Bioinformatics Network (UK CropNet) was established in 1996 in order to harness the extensive work in genome mapping in crop plants in the UK. Since this date we have published five databases from our central UK CropNet WWW site (http://synteny.nott.ac.uk/ ) with a further three to follow shortly. Our resource facilitates the identification
Oxford University Press.
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8. Sockeye: A 3D Environment for Comparative Genomics
Comparative genomics techniques are used in bioinformatics analyses to identify the structural and functional properties of DNA sequences. As the amount of available sequence data steadily increases, the ability to perform large-scale comparative analyses has become increasingly relevant. In addition, the growing complexity of genomic feature annotation mean
Cold Spring Harbor Laboratory Press.
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9. High-Throughput Computational and Experimental Techniques in Structural Genomics
Structural genomics has as its goal the provision of structural information for all possible ORF sequences through a combination of experimental and computational approaches. The access to genome sequences and cloning resources from an ever-widening array of organisms is driving high-throughput structural studies by the New York Structural Genomics Research
Cold Spring Harbor Laboratory Press.
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10. Ensembl 2002: accommodating comparative genomics
The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a comprehensive source of stable automatic annotation of human, mouse and other genome sequences, available as either an interactive web site or as flat files. Ensembl also integrates manually annotated g
Oxford University Press.
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11. MolliGen, a database dedicated to the comparative genomics of Mollicutes
Bacteria belonging to the class Mollicutes were among the first ones to be selected for complete genome sequencing because of the minimal size of their genomes and their pathogenicity for humans and a broad range of animals and plants. At this time six genome sequences have been publicly released (Mycoplasma genitalium, Mycoplasma pneumoniae, Ureaplasma urea
Oxford University Press.
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12. openSputnik—a database to ESTablish comparative plant genomics using unsaturated sequence collections
The public expressed sequence tag collections are continually being enriched with high-quality sequences that represent an ever-expanding range of taxonomically diverse plant species. While these sequence collections provide biased insight into the populations of expressed genes available within individual species and their associated tissues, the informatio
Oxford University Press.