The Legume Information System (LIS): an integrated information resource for comparative legume biology
AUTOR(ES)
Gonzales, Michael D.
FONTE
Oxford University Press
RESUMO
The Legume Information System (LIS) (http://www.comparative-legumes.org), developed by the National Center for Genome Resources in cooperation with the USDA Agricultural Research Service (ARS), is a comparative legume resource that integrates genetic and molecular data from multiple legume species enabling cross-species genomic and transcript comparisons. The LIS virtual plant interface allows simplified and intuitive navigation of transcript data from Medicago truncatula, Lotus japonicus, Glycine max and Arabidopsis thaliana. Transcript libraries are represented as images of plant organs in different developmental stages, which are selected to query the analyzed and annotated data. Complex queries can be accomplished by adding modifiers, keywords and sequence names. The LIS also contains annotated genomic data featuring transcript alignments to validate gene predictions as well as motif and similarity analyses. The genomic browser supports comparative analysis via novel dynamic functional annotation comparisons. CMap, developed as part of the GMOD project (http://www.gmod.org/cmap/index.shtml), has been incorporated to support comparative analyses of community linkage and physical map data. LIS is being expanded to incorporate gene expression and biochemical pathways which will be seamlessly integrated forming a knowledge discovery framework.
ACESSO AO ARTIGO
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=540082Documentos Relacionados
- The Georgetown University Library Information System (LIS): a minicomputer-based integrated library system.
- BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics
- MOsDB: an integrated information resource for rice genomics
- The Protein Information Resource: an integrated public resource of functional annotation of proteins
- The CRISP system: an untapped resource for biomedical research project information.